science_testtubes
 

Natural Science Course Web Sites

Spring Term 2012 Courses

CS-0177/NS-0177: Aliens: Close Encounters of a Multidisciplinary Kind

This course can be summed up as: everything you wanted to know about aliens but were afraid to ask (a scientist). The course will explore the topic of extraterrestrial intelligence from the perspective of several different fields. We will look at the history of UFO sighting claims and analyze the reliability of eye-witness testimonies, explore psychological & sociological reasons behind claims of alien abductions, and analyze the current state of the search for extraterrestrial intelligence (SETI) from the perspective of astronomy and planetary research. We will also examine how film and television have shaped our view of aliens in popular culture. We will conclude the course by looking at religions that have been inspired by UFOs and extraterrestrials.
Go to the course website.


CS-0308/NS-0308: Evolution, Islam and Modernity

This seminar course will look at the way Muslims across the globe are negotiating the relationship between Islam and modern science. We will, in particular, focus on the way evolutionary biology is received in various parts of the Muslim world and what can that tell us about the interaction between culture, politics, religion, and science. Students will be expected to do research as part of the class and present their findings at the end of the semester. Countries to be discussed in the class include, but are not limited to, Egypt, Indonesia, Iran, Malaysia, Pakistan, Turkey, Tunisia, Kazakhstan, and the Muslim diaspora in Europe and in the United States. Prerequisite: One class in Middle Eastern history or Middle East sociology, or Islam.
Go to the course website.


NS-0102: Musical Acoustics

All facets of musical performance, the production of sound, its transmission and alteration by the performance space, and its perception by members of the audience are candidates for study in acoustics. In this course, we will develop the physics of vibrating systems and wave propagation and study the measurement of sound. There will be weekly problem sets and a class presentation by each student on a topic of interest. A weekly lab will allow students to investigate various acoustical systems and measuring devices. Students will perform simple experiments, learn to operate the lab equipment, and read papers from the original literature. Students will develop an independent project in musical acoustics.


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NS-0123: Human Biological Variation

This course focuses on the science of human variation. We will explore how and why people differ biologically. For example, how do we explain distributions of skin color, sickle cell anemia or sports performance? Which variations have evolutionary (adaptive) significance and which are "just differences"? In this semester we will focus on the idea of race as both genetic construct and social reality. How did the idea of "natural" races arise? What are its uses and limitations, for example, in biomedical research? What alternatives to race exist for framing and studying human diversity? Finally, we will examine health inequalities, including the potential mechanisms by which racism may lead to poor health.


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NS-0135: The Human Skeleton in Biomedical Perspective

The Human Skeleton in a Biomedical Perspective: Bone (hard connective tissue) is unique in that no one has ever been able to make synthetic material that approaches it in tensile, torsional or compressive strength. Research in this area is rapidly growing, particularly within the biomedical and forensic sciences, and skeletal biology is ripe for new technologies and innovations. This hands-on laboratory course will focus intensively on the human skeleton, from the gross anatomical level to the histological and biochemical levels. After spending the first several weeks exploring the nature of bone tissue teams of students will design and carry out research projects that cross-disciplinary boundaries from medicine, anthropology, nutrition, and forensics.


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NS-0145: Earth and Life through Time

Humans are recent tenants on an ancient Earth. Understanding Earth's remarkable history is enlightening yet humbling. Earth's history provides a critical lens for evaluating modern environmental science issues of our modern world. In this course, we will travel through time to study the evolution of Earth from its fiery beginning over 4.5 billion years ago to the present day. We will explore the physical and biological evolution of Earth and gain an appreciation for Earth as a series of complex systems that interact dynamically and holistically. We will also learn how geologists reconstruct Earth history and as well as predict the future. This course will be valuable for anyone who is curious about the past and/or concerned about the future of Earth and its tenants. This course satisfies Division I distribution requirements.


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NS-0151/NS-0351: Tree Rings and Climate Change

Standing as silent sentinels, trees in temperate regions record temperature, rainfall, amount of sunlight and response to disturbance in the width of their annual growth rings. We can use the patterns of these rings as surrogate climate records for years before people recorded weather data. In this project-based course, we will first learn the techniques of dendochronology, the science of reading tree rings, including collection and preparation of samples, data collections and analysis, and the biology of tree growth. We will travel to various sites around New England and collect tree cores in stands where the climate signal is likely to be strong and where we can also find evidence of significant ecological events such as fire, logging, hurricanes and farm abandonment. 300-level students will act as team leaders for the main course projects.
Go to the course website.


NS-0167: Structure of Randomness

Many events, like developing cancer or winning the lottery, are apparently random when considered individually, but often possess a great deal of predictability when studied collectively. The elaboration of this insight is one of the most far-reaching developments of the last century, an understanding of which is arguably essential for anyone trying to make sense of the data and choices thrown at us daily. A variety of random processes has also been increasingly used to analyze and create music, art, and poetry. In this course we will develop the idea of stochastic (i.e., random) models for thinking about a wide range of phenomena in the sciences, arts, and everyday life. Topics will include elementary probability theory, risk analysis, mortality tables and their uses, stochastic music, computer-generated art, elementary statistics, and Markov processes. It is designed for all students, regardless of field of interest or prior love of mathematics. Computers will be used throughout the course, but no prior experience is assumed.


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NS-0198/NS-0398: Ever since Darwin

Humans vary: some short, some tall; some fat, some thin; some prolific, some nearly or completely sterile; some clever, others dull; some successful and others failures. How much of this variation is due to variation in the genes, how much due to different environments, and how much due to developmental variation not coded for or predetermined? Although this question has been studied ever since Darwin, many molecular biologists, geneticists, and "evolutionary psychologists" (as they term themselves) have concluded that it's all in the genes. However, no genes have been found that affect most of the variations listed above. Why have so many become so hereditarian in outlook? In this seminar we will read a tiny fraction of the recent literature on the attempts of some to "geneticize" everything from children's alleged dislike of spinach, to various addictions, to "brain modules" evolved on the African savannah. The principal texts are Lewontin's The Triple Helix and McCabe and McCabe's DNA: Promise and Peril. All students are expected to participate in the seminar, to write a series of three essays from the original literature on a single topic of interest, and to lead one seminar. During the seminar we will spend time thinking and working on the skills needed for successful college-level work: reading, study habits, seminar skills, and writing.
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NS-0203: Chemistry II

This is a continuation of Chemistry I: the principles and concepts examined during the previous term will be expanded and applied to more sophisticated systems. Topics will include chemical thermodynamics, nuclear chemistry, chemical equilibrium, acid-base equilibria and their applications, complex ion equilibria, and solubility, oxidation-reduction reactions, electrochemistry, and reaction rates. We will also emphasize application of those chemical principles to environmental, biological, industrial and day-to-day real-life situations. Problem sets will be assigned throughout the semester. The laboratory will consist of two project-based labs and some laboratory exercises. Basic laboratory skills, chemical instrumentation techniques, and the use of computers in the chemistry laboratory will be emphasized. Prerequisite: Successful completion of Chemistry I and its laboratory.


Go to the course website.


NS-0207: Ecology

This course is an introduction to the very different ways ecologists approach the study of natural systems. Topics covered include factors limiting populations of species, how plant and animal species interact, and ecosystem-scale studies such as nutrient cycles. A basic ecology text plus numerous classic papers will focus our lectures and discussions. Many classes will include application of ecology to environmental topics such as disturbances (fires, hurricanes), introduced species and species loss, and water pollution. In the laboratory/field section, students will design and carry out investigations, for example, on selection of trees by beavers and mimicry and predation by birds. The course will emphasize cooperative group work and student presentations. Class will meet for one hour and twenty minutes twice a week, plus an afternoon lab.
Go to the course website.


NS-0212: Organic Chemistry I

This course is an introduction to the structure, properties, reactivity, and spectroscopy of organic molecules, as well as their significance in our daily lives. We will first lay down the groundwork for the course, covering bonding, physical properties of organic compounds, stereochemistry, and kinetics and thermodynamics of organic reactions. We will then move on to the reactions of alkanes, alkyl halides, alcohols and ethers, alkenes, and alkynes, emphasizing the molecular mechanisms that allow us to predict and understand chemical behavior. Lastly, we will discuss the identification of compounds by mass spectrometry, NMR and infrared spectroscopy. Student-led discussions will address the role organic molecules play in biology, industry, society, and the environment. Additionally, weekly problem-solving sessions will be held to foster skill in mechanistic and synthetic thinking. The laboratory will provide an introduction to the preparation, purification, and identification of organic molecules. Prerequisite: High school chemistry.
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NS-0232: Water and Life in the American Southwest

For plants, animals and people in the arid regions of the American Southwest, water is life. Many cultures have developed in the region and have adapted to frequent and episodic droughts in different ways. In this class we will first learn about the climate, geology, soils, and ecology of the Southwest and then the history of human habitation from the Ancestral Puebloans up through modern Phoenix, AZ, one of the most rapidly growing parts of the US. We will take a required field trip to the region over Spring break and follow a river system such as the Salt, Gila, or Colorado, at least partway from source to sea, camping as we go. Exact trip location will depend upon weather and political climate. We will use the trip to learn firsthand how the waters are controlled and used today and how that compares with pre-contact times and to develop research projects that will form the central required work for the class. This course is supported by the Southwest Studies Program.
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NS-0237: Anthropology of the Body

This course examines the historical, medical, and ethnographic shaping of women's bodies and identity. We start with understanding the differences between sex and gender and the construction of identity for women in antiquity, then move to contemporary times, charting major trends in the construction of identity and body image that have influenced (and continue to influence) the position and health of women historically and cross-culturally. The synergistic interface of biology and culture provides a framework for examining the social construction and subsequent deconstruction of such things as childbearing and rearing, fashion (corsets, foot binding), media representations, and body rituals in an interdisciplinary manner. We will examine the ways in which gender is both physiologically and socially constructed globally, and the important role that social institutions, ideology, and cultural practices play in creating and perpetuating problematic perceptions of the female body. These perceptions, in turn, often promote marginalized identities for women in today's society. Students will finish the term with a clearer understanding of the interrelationship of culture and biology in the structuring of identity, how health inequalities are generated and perpetuated, and how to think critically about the role of both the media and medicine in their perceptions of feminity and female identity.


Go to the course website.


NS-0241: Evolutionary Biology

2009 was the 150th anniversary of the publication of Charles Darwin's "The Origin of Species." The concept of biological evolution pre-dates Darwin. However, when Darwin presented a provocative mechanism by which evolution works (i.e., natural selection), he catapulted an idea to the forefront of biology that has precipitated 150 years of research into the nature and origin of organic diversity. This course will serve as an introduction to the science of evolutionary biology. Additionally, we will take a historical look at the development of evolution as a concept and how it has led to the Modern Synthesis in biology and modern research in Evolutionary Biology. We will also investigate how Darwin's "dangerous idea" has infiltrated different areas of biology and beyond.
Go to the course website.


NS-0248: Epidemiology

NS 248 is an introduction to the principles and practice of epidemiology and the use of data in program planning and policy development. The course covers the major concepts usually found in a graduate-level introductory course in epidemiology: outbreak investigations, study design, measures of effect, internal and external validity, reliability, and causal inference. Assigned readings are drawn from a standard textbook and the primary literature. In addition, students read case studies and work step-by-step through major epidemiologic investigations of the past century; they also form small groups to design and conduct a small epidemiologic study on campus. The major assignments are four studies, regular response papers/worksheets on the readings, a critique of a primary paper, a poster presentation of the on-campus study, and a proposal for an epidemiologic study of their own design.


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NS-0250: Immunology

This course provides a foundation for understanding immunology, with an emphasis on human disease. Each lesson includes a 2-hour discussion followed by a Journal Club-format critique of a primary paper, review article, or case study. We will explore mechanisms used to identify and remove pathogens. Beginning with innate immune recognition and responses, we will also investigate adaptive immune (B and T cell) diversity, specificity, development, tolerance, and responses, and then apply this knowledge to circumstances of immune failure, including allergy and asthma, autoimmunity (multiple sclerosis, lupus, and rheumatoid arthritis), and vaccination and infectious diseases (influenza, tuberculosis, hepatitis, malaria, and HIV). This part of the course provides real-life immunological theory and offers an opportunity to work with the complex web of cells and molecules that constitute the immune response. Students will read from Janeway's Immuniobiology 5th edition and assigned review articles. Regular participation in class discussion is expected and students will both explain the readings and present findings from small group discussion. Students will complete problem sets, case studies related to select disease topics, a midterm critique of a pre-selected primary paper, and a final paper on an immunological topic of their choosing. The final paper critique should include an in-depth review of the context of the primary paper and a proposal for future experimentation, and students will give a presentation on their final papers to the class.
Go to the course website.


NS-0261: Calculus II

This course extends the concepts, techniques and applications of an introductory calculus course. We'll detect periodicity in noisy data, and study functions of several variables, integration, differential equations, and the approximation of functions by polynomials. We'll continue the analysis of dynamical systems taking models from ecology, economics, epidemiology, and physics. We will finish with an introduction to the theory and applications of Fourier series and harmonic analysis. Computers and numerical methods will be used throughout. Regular substantial problem sets will be assigned and will constitute the heart of each student's course work. Prerequisite: Calculus in Context or a Calculus I course.

 

The text we will be using is available for free at:

http://www.math.smith.edu/Local/cicintro/cicintro.html


Go to the course website.


NS-0262: Biochemistry

Biochemistry is the study of the molecules and chemical reactions of life. Considering the vast diversity of living organisms, one might also expect them to be composed of significantly different biomolecules, and to use unique mechanisms for obtaining energy and communicating different biological information. To the contrary, the principles and language of biochemistry are common to all life: in general, the same chemical compounds and the same metabolic processes found in bacteria exist in organisms as distantly related as whales. To fully appreciate life, people should consider their biochemistry. Classroom topics will include the structure and function of proteins and carbohydrates, metabolism and bioenergetics, but will not include nucleic acids. Prerequisite: none, but Organic Chemistry is desirable.


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NS-0265: Introduction to Statistics and Experimental Design

This course develops skills for designing experiments and analyzing data using standard statistical methods. Work will include the use of some common computer packages, especially Open Office with OOoStat and R, plus Excel and Minitab. We will use a book that introduces the methods and other readings, mainly on line. We discuss examples in published research and relevant aspects of the philosophy of science.  We will also design and carry out data collection in class, with some data collected and analyzed by students on their own. The emphasis in this course will be on problems, interpretation, and being able to choose and use common statistical methods and tests for data analysis -- actually using statistics in research.


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NS-0269: Geomorphology

Earth's surface is always changing. Geomorphology is the study of Earth's surface, its landforms, and the processes that shape landforms. The goal of this course is for you to recognize common landforms and gain a quantitative understanding of Earth surface processes. Once you understand how surface processes work, you will have a better idea of how a landscape evolved to its present state and how the landscape could change in the future. This course will include field trips and projects that examine different landforms and processes in New England, including glaciation, river processes, coastal erosion, mass movement, and wind activity.


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NS-0294: Sustainable Agriculture and Organic Farming

This course is a broad introduction to the practices of sustainable agriculture and organic farming. It includes experience in the field, combined with study of the underlying science and technology of several key agricultural topics, as well as some more economic/political aspects. We will focus on sustainable and/or organic methods that minimize the use of nonrenewable resources and the associated pros and cons. Coursework will include activities and assignments at the Hampshire College farm and nearby farms/groups, as well as short papers, problems, and options for independent work in particular areas. In-class topics also include readings, discussions, and assignments aimed at understanding sustainable practices in general. For example, we will study problems with pest control and how to manage pests given their life cycles and ecology, basic aspects of soil and fertilizers, how animals fit into sustainable schemes of production, winter greenhouses, maple sugaring, crop and farm diversification, the concerns about buying local vs. imported and/or organic food, labor and energy issues, and more.


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NS-0299: Learning Activity Projects

Students in Learning Activity Projects compile lists of learning activities based on their independent work during the semester. Each student will write a title, description and self-evaluation for every learning activity to be officially recognized for Learning Activity Projects credit. The student must also secure a signed evaluation of the work, written by someone familiar with both the subject matter and her/his course of study. The subjects of the learning activities need not be restricted to a particular discipline, school of thought, or arena of creative work. Students are encouraged to collaborate with others in their courses of study, for example, by joining student-led Experimental Program in Education and Community (EPEC) courses or informal learning groups.
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NS-0318: Complex Function Theory

The complex numbers, described by Leibniz as amphibia between existence and non-existence, are now an important tool for both pure and applied mathematics. They have a fruitful geometric interpretation, provide an algebraic closure to the reals (in the sense that all polynomials with coefficient in C have roots in C), and allow, with a more coherent theory than for real variables, the development of the calculus. The important exponential function, in particular, extends elegantly to the complex domain. This course will concentrate on the differentiation and integration of complex functions and their mapping properties. We will see application of our theory to geometry, dynamics (including the Mandelbrot set), and physics. A working knowledge of elementary calculus is assumed. There will be a weekly problem session attached to the course and regular written assignments. (Anticipating a small class, it may be possible to change the meeting times.)
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NS-0327: Population Genetics

What happens to genetic variation initially created by mutations, and what is its fate in a population? What forces influence this variation at the molecular and organismic levels, and how does this lead to evolution, speciation, and biodiversity? The field of population genetics now plays an important role in many central biological questions, such as "How are human populations related?" and "How has selection influenced variation at the genomic level?" Through practice and investigating the primary literature, this class will introduce students to the basic theory and observations in this field, and students will learn the principles of genetics and statistics that provide insight into genetic variation in populations. Prerequisite: some Calculus and some Genetics.
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NS-0332: Rise and Fall of Biology's Central Dogma

The rise and fall of biology's Central Dogma (a.k.a. regulation of gene expression): The Central Dogma of biology states that DNA is transcribed into mRNA, which is then translated into proteins. That is, DNA holds the information, mRNA is the messenger, and proteins perform the work. There is an implied rigidity in the roles and directionality of this 60-year-old paradigm on how genes are expressed. In the last several years, however, we have uncovered a more complex reality. There are exceptions to the Dogma and myriad dynamic levels regulating gene expression. We will explore all levels of gene expression, from transcription factors and enhancers to translational and posttranslational regulation. We also will investigate the increasingly complex RNA world, including microRNAs, piwi-interacting RNAs and long noncoding RNAs. The course will consist predominantly of reading and presenting current primary literature. In all, we will work toward disassembly of the Dogma.


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NS-0344: Enzymes

In this course we will explore the fundamentals of catalysis and how they manifest in enzymatic systems. We will use nature's "simplest" catalyst, the proton, to examine the physical principles of catalysis, followed by iron as a "simple" redox catalyst. These two models will be used to address the similarities and differences between homogeneous chemical catalysis and enzymes, including their substrate specificity, regio- and stereoselectivity, and enormous rate accelerations. After a unit on enzyme kinetics, we will proceed to examine some particularly important enzymes and enzymatic systems. We will start with some well-studied systems, such as the serine proteases, alcohol dehyrogenase, and cytochrome P450, and, finally, we will compare these with some enzymes and enzyme complexes of particular biological and environmental interest, such Methane Monooxygenase, Rubisco, Photosystem II, and ATP Synthase. Prerequisite: Organic Chemistry I.
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NS-0366: Environmental Chemistry

This course will explore several current environmental topics with strong components in chemistry. We will put special emphasis on environmental concerns in the hydrosphere, soils, and atmosphere. Topics will include chemistry of natural waters, water pollution and wastewater treatment, toxic heavy metals and their complexation properties in soils, and inorganic and organic pollutants in the atmosphere. We will also examine energy use and its environmental consequences. Considerable time will be spent on learning environmental chemical analysis methods and instrumentation in environmental monitoring. These include inductively coupled plasma-mass spectrometry (ICP-MS) in trace metal analysis, infrared techniques in characterization of pollutants, chromatographic methods for separation and identification of contaminants. We will also look at sampling and sample preparation methods, the principles behind the operation of analytical instruments, and elemental speciation techniques used in environmental sample analysis. This class is particularly recommended for advanced Division II and III students with interests in environmental issues. We will conduct a discovery project of local environmental interest. Class will run in seminar format. Participation in class, satisfactory work on problem sets, oral presentations of topics of environmental interest, successful completion of laboratory/field work, and project reports are required for evaluation. Prerequisites: Chemistry I and II.


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NS-0385: Sustainability Seminar

This course is designed for the cohort of students involved in the sustainable design/technology area. It will offer an arena for students to present their own work and evaluate that of others, discuss advanced readings of interest, write analytical papers on topics of their choice, and work with guest speakers in the areas of sustainable development and technology. Class members will have large responsibility for determining the content and direction of the course. Prerequisite: A record of 200-/300-level work in sustainability studies.
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NS-0390: Selected Topics in Global Women's Health

The goals of this Mellon Language Learning course are twofold. The first is to introduce students to key issues in global women's health with a focus on Central America. Topics will span the lifecycle and will be drawn from the fields of infectious disease, reproductive health, nutrition, chronic disease, and health policy. Most readings will come from the medical and epidemiologic literature though attention will also be given to the political, economic and social factors that weigh heavily on health. The second goal is to advance students' knowledge of Spanish by integrating Spanish materials into the syllabus. A central text will be the health care manual, "Where There is No Doctor For Women," which is available in both Spanish and English. The course is not intended to be a language course per se, but one that reinforces existing skills and inspires students to pursue further study and practice. Prerequisite: at least two semester of prior Spanish instruction.
Go to the course website.


NS-IND: Independent Study - Ecological Modeling

To register for an Independent Study with Hampshire College faculty you need to pick up an Independent Study form in the Central Records office and get the form signed by the faculty supervisor as well as your advisor.


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NS-IND: Independent Study - Epidemiological Modeling

In this study I will examine epidemiological models through a cross-cultural lens.  I will read primary literature that contains epidemiological models and explore how the models would be modified for different cultures.  Would parameter values just need to be adjusted or would new equations or terms need to be added?  To integrate this course with others that I am taking concurrently, I will primarily study ordinary, delay, and partial differential equation models and focus on using appropriate numerical techniques.  All of this work will be presented in a paper that will contain a literature review of the epidemiological models and how the models can be modified for different cultures.


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NS-3IND: Independent Study - 300 Level

To register for an Independent Study with Hampshire College faculty you need to pick up an Independent Study form in the Central Records office and get the form signed by the faculty supervisor as well as your advisor.
Go to the course website.

 
 

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