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Natural Science Course Web Sites

Spring Term 2013 Courses

CS-0177/NS-0177: Aliens: Close Encounters of a Multidisciplinary Kind

This course can be summed up as: everything you wanted to know about aliens but were afraid to ask (a scientist). The course will explore the topic of extraterrestrial intelligence from the perspective of several different fields. We will look at the history of UFO sighting claims and analyze the reliability of eye-witness testimonies, explore psychological and sociological reasons behind claims of alien abductions, and analyze the current state of the search for extraterrestrial intelligence (SETI) from the perspective of astronomy and planetary research. We will also examine how film and television have shaped our view of aliens in popular culture. We will conclude the course by looking at religions that have been inspired by UFOs and extraterrestrials.
Go to the course website.


NS-0108: The Art of Life

Life is full of hidden beauty. From the basic structures of biological compounds, to the movement of compounds within a cell, to the combined activities of tissues that contribute to the function of an organ, to the structures of complete organisms, the phenomena of life are both intellectually and aesthetically stimulating. This course will explore the complexities of life and use them as inspiration for creating art. We will learn the science in the classroom and laboratory and then move to the studio where students will utilize their comprehension of biological phenomena to create design and art projects. The characteristics of design that are apparent when observing biological forms (such as bundling, branching, repetition, variation, etc.) will be used as a starting vocabulary to develop works of art. Our goal is to use the relationship between art and science to foster a greater sensitivity to the aesthetics of natural forms, and to leave the classroom looking at our integrated and fragile relationship to the natural environment with new eyes. The course will culminate in an exhibition at the end of the semester.


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NS-0110: Myths of Science


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NS-0112: Puzzles and Paradoxes

It has been argued that puzzling is as intrinsic to human nature as humor, language, music, and mathematics. Zeno's paradoxes of motion and the liar and heap paradoxes ("This sentence is false," "Does one grain of sand change a non-heap into a heap?") have challenged thinkers for centuries; and other paradoxes have forced changes in philosophy, scientific thinking, logic, and mathematics. We'll read, write, and talk about the Riddle of the Sphinx, the Minotaur's Maze, the Rhind papyrus, Pythagorean mysticism, Archimedes' wheel, Fibonacci's rabbits, Durer's magic square, Konigsberg's bridges, Lewis Carroll, Sam Loyd, E.H. Dudeney, Mvbius's band, Maxwell's Demon, Schrodinger's cat, Hempel's raven, the theorems of Kurt Godel and Kenneth Arrow, the Loony Loop, Rubik's cube, the Prisoner's Dilemma and the unexpected hanging, Russell, Berrocal, Christie, Escher, Borges, Catch-22, Sudoku, Gardner, Coffin, Kim, Smullyan, and Shortz. Recreational mathematics will pervade the course, and we'll grapple with irrationality, pigeonholes, infinity, and the 4th dimension. We'll discover, create, classify, share, enjoy, and be frustrated and amazed by lots of visual illusions, mechanical, take-apart, assembly, sequential, jigsaw, word, and logic puzzles. We'll hone our problem-solving skills and consider the pedagogic and social value of puzzles. Armed with examples and experience, we might find some possible answers to "what makes a puzzle 'good'?" and "why do people puzzle?"
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NS-0123: Human Biological Variation

This course focuses on the science of human genetic and biological variation. How does variation come about in evolution? Which variations have adaptive and functional significance and which are "just differences"? What is the evolutionary explanation, distribution, and significance of human variation in, for example, sickle cell anemia, skin color and sports performance? How are individuals grouped, how are differences studied, and to what purpose? How did the idea of "natural" races arise, and how and why, despite key scientific flaws, does it persist? This semester we will focus on the idea of race as a genetic construct versus lived, social reality and in particular, how race is used in biomedical research. Finally, we will examine health inequalities by race and the potential mechanisms by which racism may lead to poor health.


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NS-0145: Earth and Life through Time

Humans are recent tenants on an ancient Earth. Understanding Earth's remarkable history is enlightening yet humbling. Earth's history provides a critical lens for evaluating modern environmental science issues of our modern world. In this course, we will travel through time to study the evolution of Earth from its fiery beginning over 4.5 billion years ago to the present day. We will explore the physical and biological evolution of Earth and gain an appreciation for Earth as a series of complex systems that interact dynamically and holistically. We will also learn how geologists reconstruct Earth history and as well as predict the future. This course will be valuable for anyone who is curious about the past and/or concerned about the future of Earth and its tenants. This course satisfies Division I “Physical and Biological Sciences” distribution requirements.


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NS-0151/NS-0351: Tree Rings and Climate Change

Standing as silent sentinels, trees in temperate regions record temperature, rainfall, amount of sunlight and response to disturbance in the width of their annual growth rings. We can use the patterns of these rings as surrogate climate records for years before people recorded weather data. In this project-based course, we will first learn the techniques of dendochronology, the science of reading tree rings, including collection and preparation of samples, data collections and analysis, and the biology of tree growth. We will travel to various sites around New England and collect tree cores in stands where the climate signal is likely to be strong and where we can also find evidence of significant ecological events such as fire, logging, hurricanes and farm abandonment. 300-level students will act as team leaders for the main course projects.
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NS-0157/NS-0357: Sustainable Water Resources

All life requires water to survive. Where do we get our water? Where does it go? Will there always be enough? How can we manage our water resources to ensure there is enough? What policies affect these decisions? This course explores these topics using a systems approach to gain an understanding of how our water resources are intimately tied with the surrounding ecosystem. Topics include the water cycle, hydrologic budgets, urban stormwater management and low impact development. Students will read and discuss primary literature, delineate watershed boundaries, compute water budgets (at the watershed level and for their own water use), and complete a group design project. Each group will develop a design for a stormwater best management practice to be located somewhere on the Hampshire campus. Designs will include: assessment of need for improved stormwater management, building layout/plan, and stormwater calculations. Groups will be required to present their final designs to the class.


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NS-0158: Brain Mechanisms

In this course students will examine the function of the nervous system with particular focus on mechanisms at work in the brain. The course will link current advances in cell, molecular and developmental physiology research in the context of neuronal functional mechanisms. Topics may include neurotransmitter function and regulation, brain area function, integrative intracellular signaling pathways, neuroendocrine control. Advanced topics may include the correlation of ion channel properties and synaptic transmission with physiological functions such as learning and memory, circuits involved in behavior, and the organizational principles for the development of functional neural networks at synaptic and cellular levels. Along with regular discussion participation and problem solving, students will prepare papers and lead discussions on their own chosen topics. This course is particularly appropriate for students interested in behavioral mechanisms, neurophysiology, psychology, and neuroendocrinology. This is a course in the Culture, Brain and Development Program.
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NS-0198: X-Ref With Cs 198


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NS-0205: Physics II

Physics II is a calculus-based physics course that covers thermodynamics, statistical mechanics and electromagnetism at a basic level. Project-like labs look at the thermodynamics of Nitinol, building circuits with operational amplifiers and measuring environmental electric fields.
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NS-0206: Geography, Ecology, and Indigenous American History and Disposession in the American Northwest, 1800 to the Present

This Spring 2013 course emphasizes individual projects and class discussion. The course will explore the ecology of the Pacific Northwest region, cover underlying scientific principles, and ask these questions: How has human history, including the dispossession of Native Americans, influenced land use and ecological and agricultural changes in the northwest? How did the river and mountain geography of the Columbia Basin influence the development of pre-1800 indigenous civilization? What are the chief ecological issues, past and present, in this region? What was the immediate and long-term Native American response to the Lewis and Clark expedition of 1804-06 and its aftermath? How have power dams on the Columbia and Snake Rivers affected salmon populations and regulations perpetuating Indian fishing rights? What cultural and political developments led to the Nez Perce trek of 1877? How have Indian reservations and land use patterns changed through the 20th century? What do we know about invasive species, rare and endangered populations, and the effects of climate change in the northwest? How has federal land and Indian policy in the northwest evolved? The course will make use of readings in northwest ecology and Native American history and will include seminar-type discussions that focus on individual projects and presentations.


Go to the course website.


NS-0210: From Farm to Fork

This course will provide an introduction to the processing and preservation of foods. Basic scientific principles will be discussed alongside historical developments in food processing. Principles will be illustrated by exposure to both home as well as industrial processing techniques.


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NS-0212: Organic Chemistry I

This course is an introduction to the structure, properties, reactivity, and spectroscopy of organic molecules, as well as their significance in our daily lives. We will first lay down the groundwork for the course, covering bonding, physical properties of organic compounds, stereochemistry, and kinetics and thermodynamics of organic reactions. We will then move on to the reactions of alkanes, alkyl halides, alcohols and ethers, alkenes, and alkynes, emphasizing the molecular mechanisms that allow us to predict and understand chemical behavior. Lastly, we will discuss the identification of compounds by mass spectrometry, NMR and infrared spectroscopy. Student-led discussions will address the role organic molecules play in biology, industry, society, and the environment. Additionally, weekly problem-solving sessions will be held to foster skill in mechanistic and synthetic thinking. The laboratory will provide an introduction to the preparation, purification, and identification of organic molecules. Prerequisite: High school chemistry
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NS-0220: Human Physiology

With humans as our primary model system, we will cover cellular and general tissue physiology and the endocrine, nervous, cardiovascular, digestive, respiratory, and renal organ systems. Primary emphasis is on functional processes in these systems and on cellular and molecular mechanisms common across systems. Students will engage in class problems, lectures, and reading of secondary science literature. Basic knowledge of and comfort with biology, chemistry, and math is necessary.
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NS-0222: Vernal Pools: Ecology, Evolution and Conservation

Vernal pools have served as model systems throughout much of biology, with their inhabitants yielding insights into the evolution of sex, metapopulation theory, endosymbiosis, endangered species conservation and more. In this course we explore ecology, evolution, and conservation through the lens of the ephemeral wetland microcosm. Each week we will examine case studies from the scientific literature, exploring the system from many different angles. A primary focus of the course will be on developing and defending scientific study designs. For their final project, students will complete an independent experimental study. During lab periods, we will pay weekly visits to ponds on campus. Prerequisite: a course in evolution, ecology, or statistics.


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NS-0226: Sustainability in Practice

Although many students are interested in studying issues related to sustainability - and may wish to pursue careers in this area - it is difficult for them to define what "sustainability" is and go about developing their own academic program. What skills, content areas, and experiences are important? How do students gain depth in a particular area? This course is designed to introduce students to people, some Hampshire alums, working towards a sustainable future in different ways and who can provide guidance and examples. Sustainable food production will be one focus of the course. Through readings, discussions, and field trips students will see what, for example, an alum who is internationally known for sustainable fish production actually does - and his journey to his present position. Energy-efficient home and building design will likely be another focus of the course, given sufficient student interest. The class will also help students work towards the Five College Sustainability certificate program as they design a course of studies in Division II and III. The course will culminate in a final written project such as a Division III proposal for students completing Division II.


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NS-0232: Life and Water in the American Southwest

Water comes to the American Southwest in cloudbursts and monsoons, in flash floods that turn dust to fertile soil overnight. For centuries human populations have adapted to episodic rainfall culturally and technologically, using water-sparing methods not unlike those seen in native plants and animals. In this course we will spend the first few weeks learning about the peoples, climates, and ecological communities along the Mexico/US border and up into the Mogollon highlands and mountains of Arizona and New Mexico, with emphasis on the Colorado River Basin. There will be an optional joint trip with OPRA to the lower Colorado. Students will be responsible for all travel expenses. This course is part of the Southwest Studies Program at Hampshire College.
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NS-0234: Molecular Biology


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NS-0235: Methods in Molecular Biology

This introductory course will explore the process of doing scientific research in a molecular biology lab. Students will learn numerous techniques in the lab, including DNA isolation, PCR, gel electrophoresis, restriction enzyme mapping, cloning, and basic microscopy. Additionally, we will investigate the historical and conceptual aspects of these approaches. Students will engage in semester-long research projects where they design and carryout experiments, collect and analyze data, and report their conclusions in written and oral formats. This course is intended for students with little or no experience in a molecular biology lab, and it will prepare students for more advanced molecular lab courses and training. Instructor permission required.


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NS-0241: Computer Models of Bio Systems


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NS-0247: Cell Biology

Grace's office hours are on Wednesdays from 4-5pm in the Cole Lizard Lounge (3rd floor). Please email her ahead of time if you plan to go.

 

This course will explore the history of cell biology and the experiments that taught us what we know today. We will read primary literarure about most organelles to study their structure and function, and students will choose one function of the cell to write a mini-review about. We will also spend some time working hands-on with cells and microscopy data, although this is not a lab course.


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NS-0248: Epidemiology

NS 248 is an introduction to the principles and practice of epidemiology and the use of data in program planning and policy development. The course covers the major concepts usually found in a graduate-level introductory course in epidemiology: outbreak investigations, study design, measures of effect, internal and external validity, reliability, and causal inference. Assigned readings are drawn from a standard textbook and the primary literature. In addition, students read case studies and work step-by-step through major epidemiologic investigations of the past century; they also form small groups to design and conduct a small epidemiologic study on campus. The major assignments are four case studies, regular response papers/worksheets on the readings, a critique of a primary paper, a poster presentation of the on-campus study, and a proposal for an epidemiologic study of their own design.


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NS-0252: Modern Disease and Culture

Disease has influenced our civilization, and our civilization has influenced disease. How have the food industry, the media, politics, and technology affected our health? How have different races, genders, sexual orientations, and geographic locations been affected by modern disease? In this course, we will examine the relationship between disease and culture and how life as we know it has been affected. Students will read case studies and have debates about selected topics, and are invited to bring in news articles and primary literature to discuss. Students will choose a topic of interest to research throughout the semester and present to the class in the final week.


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NS-0261: Calculus II

This course extends the concepts, techniques and applications of an introductory calculus course. We'll detect periodicity in noisy data, and study functions of several variables, integration, differential equations, and the approximation of functions by polynomials. We'll continue the analysis of dynamical systems taking models from student selected primary literature on ecology, economics, epidemiology, and physics. We will finish with an introduction to the theory and applications of Fourier series and harmonic analysis. Computers and numerical methods will be used throughout. In addition to regular substantial problem sets, each student will apply the concepts to recently published models of their choosing. Pre-requisite: Calculus in Context (NS 260) or another Calc I course.


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NS-0263: Human Evolution

To understand who we are and our place in the biosphere, we need to know from where we came and how we got here. Despite concerted focus, however, there still is uncertainty about our biological origins, our evolution, and our future. This course will serve as a scientific overview of human speciation and evolution. Topics of discussion will include: early evolution of the genus Homo and primates in general, hypotheses for human adaptations and historical movements, molecular vs. anthropological explanations for our evolution, genetic variation within/among current human populations, cultural evolution, and evolutionary explanations for human behavior. We will use both applied and primary scientific research literature to explore topics in these areas. Students will research specific aspects or questions and present their findings in written and oral format.


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NS-0265: Introduction to Statistics and Experimental Design

This course develops skills for designing experiments and analyzing data using standard statistical methods. Work will include the use of some common computer packages, mainly Excel or Open Office, Minitab and R. We will use a standard textbook and also design and carry out data collection in class, with some data collected and analyzed by students on their own. We will also discuss examples of published research and relevant aspects of the philosophy of science. The emphasis in this course will be on problem solving and interpretation and being able to choose and use common statistical methods and tests for data analysis -- actually using statistics.
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NS-0268: Introduction to Geographic Information Systems and Natural Resource Management

Geographic Information Systems (GIS) are evolving computerized tools that greatly facilitate describing, modeling, and managing our natural resources. In this course, we will learn GIS tools, specifically ArcGIS 9.2, necessary to map and analyze the natural resources, focusing on the Hampshire College campus. We will learn about making and using maps, using technology ranging from counting footsteps to satellite navigation (Geographic Positioning Systems, GPS). We will learn how to create new GIS data as well as find appropriate existing data. We will learn how to use GIS tools to map features, analyze landscapes, model processes, and to manage natural resources. We will concentration on learning the practical aspects of GIS as a tool for natural science investigations. In addition to class activities, students will develop their own GIS projects during the second half of the semester that allow them to pursue their specific interests and refine their GIS skills.
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NS-0272: Anthropology of Reproduction

This course focuses on the biological and cultural components of reproduction from an evolutionary and cross-cultural perspective. Beginning with the evolution of the pelvis, this course examines the nutritional problems, growth and developmental problems, health problems, and the trauma that can affect successful childbirth. The birth process will be studied for women in the ancient world and we will examine historical trends in obstetrics, as well. Worldwide rates of maternal mortality will be used to understand the risks that some women face. Birthing customs and beliefs will be examined for indigenous women in a number of different cultures. Students will be required to present and discuss material and to work on a single large research project that relates to the course topic throughout the semester.


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NS-0279: Applied Statistical Methods and Climate Change

The Intergovernmental Panel on Climate Change (IPCC) is the leading international body for the assessment of climate change. It was established by the United Nations Environment Programme (UNEP) and the World Meteorological Organization (WMO) in 1988 to provide the world with a clear scientific view on the current state of knowledge on climate change and its potential environmental and socio-economic impacts. Students will learn new data analysis methods through readings of IPCC papers and related material. Online readings may be required. Topics such as multiple regression, logistic regression, multi-way ANOVA, and log-linear models for categorical data will be covered. Some simulation studies and Bayesian analysis may also be introduced. Work will include the use of some common computer packages (e.g., R, EXCEL) and homework assignments, as well as a data analysis project. We review some relevant theory, though the emphasis in this course is on knowing when and how to apply these statistical methods. Prerequisite: some statistics background, including some knowledge of hypothesis testing.
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NS-0287: Elements of Sustainability

Even if we have answers for the basic questions raised by the problem of sustainability there are still many approaches to determining a proper course of action. The viewpoints of LCA, the "ecological footprint", and "Natural Capitalism" each provide a standard against which to measure any particular program of change or development. We are presently challenged to make policy judgments of vital importance, to develop technologies and systems that increase sustainability, and to design and present these things in ways that ensure widespread adoption. In this course we will employ several case studies to examine these difficult issues. Emphasis will be placed on understanding underlying scientific principles, evaluating evidence available from the technical and scientific literature, and developing innovative approaches and solutions.


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NS-0291: Green Chemistry and Catalysis

Molecules which speed up specific chemical processes but remain unchanged are called catalysts. They play key roles wherever chemistry takes place, whether in the cell, the environment, or the manufacturing plant. Some catalysts accelerate reactions by almost 20 orders of magnitude, and many are perfectly selective for a single substrate molecule. Catalysts make life possible, and a handful have changed the way we live. This course will examine the principles of catalysis in chemical and biological systems. The terrain will be varied; we will explore many families of catalysts, from enzymes to transition metals to the proton. Nonetheless, whether we consider decomposition of a small molecule in an acidic solution or the assembly of a polymeric macromolecule by a multicomponent enzyme, we'll find that many themes of catalysis are universal. Readings will be drawn from the primary literature as well as various texts, and we will look at catalysis in both chemical and broader contexts. Students will be evaluated on active participation in class and a semester-long literature-based project. Prerequisite: Organic Chemistry I.
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NS-0294: Sustainable Agriculture and Organic Farming

This course is a broad introduction to the practices of sustainable agriculture and organic farming. It includes experience in the field, combined with study of the underlying science and technology of several key agricultural topics and methods, as well as some more economic/political aspects. We will focus on sustainable and/or organic methods that minimize the use of nonrenewable resources and the associated pros and cons. Coursework will include activities and assignments at the Hampshire College farm and nearby farms/groups, as well as short papers, problems, and options for independent work in particular areas. In-class topics also include readings, discussions, and assignments aimed at understanding sustainable practices in general. For example, we will study problems with pest control and how to manage pests sustainably/organically, given their life cycles and ecology, basic aspects of soil and fertility management, how animals fit into sustainable schemes of production, winter greenhouses, maple sugaring, crop and farm diversification, the concerns about buying local vs. imported and/or organic food, labor and energy issues, and more.
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NS-0299: Learning Activity Projects

Students in Learning Activity Projects are encouraged to collaborate with others in their courses of study, for example, by joining student-led Experimental Program in Education and Community (EPEC) courses or informal learning groups. Students compile lists of learning activities based on their independent work during the semester. Each student will write a title, description and self-evaluation for every learning activity to be officially recognized for Learning Activity Projects credit. Students must also secure a signed evaluation of the work, written by someone familiar with both the subject matter and their course of study. The subjects of the learning activities need not be restricted to a particular discipline, school of thought, or arena of creative work.


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NS-0310: Mathematical Biology

In this self-directed course, each student (or group of students) will study a mathematical model that revolutionized biology. After selecting a topic, students will read the primary literature of the chosen model focusing not only on the mathematical and biological aspects of the model, but also on the historical context and long-term impact of the work. The students will then select and read current articles that reference the original models. In some cases, the students may want to expand or modify the model and explore the implications. The students will be responsible for sharing their research with the class and preparing a final paper that compiles all of their research from the semester. Areas of mathematics that are new to the students will be discussed and short problem sets may be assigned. Potential topics include, but are not limited to, models of allometry, natural selection, CAT imaging, predator prey interactions, action potentials, phylogenetic trees, genetic coding, mutating viruses, enzyme kinetics, genetic mapping, hydrogeology, and neural networks. Due to the diversity of topics, students will be able to select models that are appropriate to their level of biological and mathematical expertise.


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NS-0316: Linear Algebra

This course develops the basic geometric, algebraic, and computational foundations of vector spaces and matrices and applies them to a wide range of problems and models. The material will be accessible to students who have taken at least one semester of calculus and is useful to most consumers of mathematics. The course focuses on real finite dimensional vector spaces and inner product spaces, although abstract and infinite-dimensional vector spaces will be discussed towards the end of the semester. Applications will be made to computer graphics, environmental models, differential equations, Fourier series, and physics. Computers will be used throughout. Problem sets will be assigned for almost every class. Prerequisite: a year of Calculus.


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NS-0329: Immunology

This course is designed as an introduction to the immune system. Our goal is to understand the basic elements of the immune system and the mechanisms by which these elements protect us from infectious agents, growth of tumors and other pathological conditions. The overview design of the course will not preclude us from exploring a few areas in depth and students will also have an opportunity to dig deeply into an area of their choosing when writing papers and doing group presentations. We will stress the experimental basis of each concept we discuss. This will enable us to see how scientists analyze questions, design experiments and draw conclusions. This process will show us how fluid "facts" are and how they are being continuously modified. Primarily for this reason, we stress understanding the process rather than memorizing the "fact". The rapid pace of discovery makes the study of the immune system exciting and challenging. This course will provide you with enough background to pursue further study in this area. Prerequisite: physiology, cell biology, or molecular biology.
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NS-0365: Environmental Geochemistry


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NS-0390: Selected Topics in Global Women's Health

The goals of this Mellon Language Learning course are twofold. The first is to introduce students to key issues in global women's health with a focus on Central America. Topics will span the lifecycle and will be drawn from the fields of infectious disease, reproductive health, nutrition, chronic disease and health policy. Most readings will come from the medical and epidemiologic literature though attention will also be given to the political, economic and social factors that weigh heavily on health. The second goal is to advance students' knowledge of Spanish by integrating Spanish materials into the syllabus. A central text will be the health care manual "Where Women Have No Doctor" which is available in both Spanish and English. The course in not intended to be a language course per se, but one that reinforces existing skills and inspires students to pursue further study and practice. Prerequisite: at least two semesters of prior Spanish instruction.


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NS-0396: Brewing Microbiology

We will explore the complex microbial interactions and succession seen in the production of some ales. This will be a research project based course focused on questions of interest to brewers. The microbiology of many of the Belgian ales and some American dry hopped beers is quite complex and largely unexplored at the molecular level. The fermentation is natural and often involves mixed cultures of yeasts, and bacteria. Some microorganisms may participate in parallel, while others act in a sequential manner with a changing dominant biota during the course of fermentation. Little work has been done to characterize these organisms at the molecular level. Even less is known about the environmental influences affecting the selection and displacement of the series of organisms that grow in these ales and the contribution of minor byproducts including flavor active esters and other bioactive molecules produced during fermentation. Previous course work in chemistry and microbiology or molecular biology is required. Prerequisite: NS 296, Zymurgy.
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NS-0398: Not Available


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NS-1IND: Independent Study - 100 Level

To register for an Independent Study with Hampshire College faculty you need to pick up an Independent Study form in the Central Records office and get the form signed by the faculty supervisor as well as your advisor.
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NS-2IND: Independent Study - 200 Level

To register for an Independent Study with Hampshire College faculty you need to pick up an Independent Study form in the Central Records office and get the form signed by the faculty supervisor as well as your advisor.
Go to the course website.

 
 

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